Gene Expression Atlas Explorer

Overview

Gene Expression Atlas Explorer is an interactive web application for visualizing single-cell RNA-seq gene expression patterns across immune cell types and cancer-related genes. It provides instant gene expression lookup without requiring programming knowledge, making single-cell analysis accessible to wet-lab scientists, clinicians, and researchers who don't write code.

Key Features

• •Real-time gene search across 45+ curated genes including immune cell markers and cancer genes with auto-suggest functionality.
• •Interactive UMAP visualization with 2,500 simulated cells based on PBMC 3k structure, showing expression patterns with intuitive color gradients.
• •Cell-type specificity scoring that quantifies how specific a gene is to its primary cell type, helping identify optimal markers.
• •Multi-gene comparison mode with radar charts for comparing up to 3 genes simultaneously, perfect for marker panel design.
• •Biological context integration showing key pathways, clinical relevance, and FDA-approved drugs targeting each gene.
• •Publication-ready visualizations including UMAP projections and bar charts ready for export and presentation.

Technologies

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